PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g027510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 292aa    MW: 32351 Da    PI: 6.3379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g027510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.61.3e-07212234123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  Csa13g027510.1 212 HYCQICGKGFKRDANLRMHMRAH 234
                     68*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.52E-6210238No hitNo description
Gene3DG3DSA:3.30.160.602.8E-6212236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0028212234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTNQDEHITN KGEGSMSSFS GTTTSSSKQI YLNPVTAAGT KSLEEDDVSL SLIYNLSTLQ  60
DKAHQIQSLV SFYMISINHI NQSSGSTSLA VANIGSLIQE IITAASSMLF ACQQLHIGSN  120
NDNDIHNDQT ADAMVLDFSR QETDPSRDFV QESTNLFGVQ ERGQISFPDQ NHNWYGTETI  180
NPKKEHHHSK PRPGNYEILE LDVADLLAKY THYCQICGKG FKRDANLRMH MRAHGDEYKT  240
REALISPTSQ DKKGDYSKDK LMSHVSLFLG HVPAHGSSQP PTITLRSFCI L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052430.0AB005243.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRN17.
GenBankAK2277400.0AK227740.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-31-P16.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010454569.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLD7M1K61e-156D7M1K6_ARALL; Zinc finger family protein
STRINGfgenesh1_pm.C_scaffold_60018051e-155(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-142C2H2 family protein